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Home » Recent Posts » Recipes » Homemade Mac and Cheese Bites with Butternut Squash (BLW Recipe)

Last Updated July 9, 2023. Published July 14, 2023 By Abbey Sharp 21 Comments

Homemade Mac and Cheese Bites with Butternut Squash (BLW Recipe)

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Medically reviewed by Abbey Sharp, Registered Dietitian (RD), BASc.

These homemade butternut squash mac and cheese bites make the perfect on the go healthy snack for baby led weaning, kids and adults!

Homemade mac and cheese bites on a blue plate.

I’m pretty sure mac and cheese is a childhood right of passage. So there is NO WAY I am skimping out on this childhood experience for my boys. While I have no issues with the blue box stuff (#nostalgia), I wanted to create a finger food for the kiddos that’s easy to take with me for on-the-go snacks, and easy to batch prep and freeze! These homemade mac and cheese bites check all the boxes.

Table of contents

  • Why This Recipe Works
  • Key Ingredients
  • How to Make This Recipe
  • Expert Tips
  • Recipe FAQs
  • More Recipes You Might Like

Why This Recipe Works

My kids are obsessed with these homemade mac and cheese bites, and so am I! Here’s why we love em:

  • Baby led weaning friendly
  • Packed with nutrients
  • Naturally sweetened with vegetables
  • Made with pantry and freezer staples

Key Ingredients

Ingredients needed to make homemade mac and cheese bites.

Chickpea macaroni — I like using chickpea pasta as it provides extra protein and nutrients.

Butternut Squash — You can use fresh or frozen butternut squash for this stuffed shell recipe. Butternut squash is a great source of fibre and is packed with vitamins A, C, E and B!

Cheese — I use a mix of cheeses for these mac and cheese bites. I use grated cheddar, grated fresh mozzarella, and finely grated parmesan cheese. The more the merrier.

Toppings — For extra nutrients, we top the mac and cheese bites with flax and hemp hearts. They don’t change the flavour so your kids won’t even notice it!

How to Make This Recipe

Set of three photos showing cooked pasta and making a roux.

Step 1: Cook the pasta al dente according to box directions. Set aside.

Step 2: To a medium skillet with high sides, over medium heat, heat the butter. Add the onions and garlic and cook until softened and fragrant, about 2-3 minutes.

Step 3: Add the flour and stir to make a roux.

Set of three photos showing making a butternut squash sauce.

Step 4: Add the milk and cook over medium low heat, stirring frequently until the milk bubbles slightly and thickens.

Step 5: Add the butternut squash, mustard and paprika and cook for an additional 4-5 minutes until they are soft.

Step 6: Transfer to a blender and puree until smooth.

Set of three photos showing cheese sauce being made, coating pasta with it, and then transferred to a muffin tin.

Step 7: Return the sauce back to the pot over medium low heat and add the cheddar and mozzarella cheese. Cook until the cheese melts. Season with salt and pepper to taste.

Step 8: Take the sauce off the heat and add to the pasta.

Step 9: Beat the eggs and quickly mix with the sauce and pasta. Spray the mini muffin tins with nonstick spray. Fill the muffin tins with the mixture and top with flax, hemp hearts and parmesan. Bake for 15-20 minutes or until golden brown and set in a 350 degree oven. Serve right away, or transfer to a freezer bag to pull out as easy on the go snacks.

Expert Tips

I recommend grating your own cheese instead of buying pre-grated cheese. Pre-grated cheese doesn’t melt as nicely as cheese that you grate yourself.

You can add panko on top of the mac and cheese bites before baking to give them more of a crunch.

If you are looking to buy a muffin tin for this, I recommend a silicone muffin tin as you can easily pop the mac and cheese bites out in a flash.

Recipe FAQs

Are these homemade mac and cheese bites freezer friendly?

Obvs. I’m a mom, so making these mini mac muffins isn’t just for fun. These cups are just what I need when I need to pack a quick lunch for the boys, or a snack when we go to the park. When the mac and cheese bites have cooled, flash freeze them on a sheet pan then throw them in a freezer bag. Then, when the moment strikes, these cups will save the day.

Can I make these mac and cheese bites gluten free?

You bet! Just go for gluten free pasta and flour! My pick is chickpea or bean based pasta for extra nutrition!

How do I get extra protein into these squash mac and cheese bites?

We are a huge fan of using bean based pasta because it packs a ton of fibre and protein! If your kid is a carbaholic like mine (they all are!!) this is a great way to sneak some extra protein in.

Can I use regular pasta?

Yes, you can definitely use regular pasta instead of chickpea pasta for these little mac and cheese bites.

Baby grabbing a mac and cheese bite

More Recipes You Might Like

Want some more BLW recipes like these homemade mac and cheese bites? Try these ones:

  • Cheesy High Iron Baby Meatballs
  • BLW Peanut Butter Banana Mini Muffins
  • Vegan Homemade Granola Bars
  • BLW Chickpea Peanut Butter Baby Biscuits

Now I want to hear from you. What are your go-to baby led weaning snack recipes?

Mac and cheese bites on a blue plate.

Homemade Mac and Cheese Bites with Butternut Squash (BLW Recipe)

These homemade Mac and Cheese Bites make for the perfect on-the-go healthy snack or lunch with extra veggies to boot for babies, toddlers, kids, and even parents too.
5 from 12 votes
Print Pin Rate
CourseSnack
CuisineAmerican
Prep Time15 minutes minutes
Cook Time30 minutes minutes
Total Time45 minutes minutes
Servings72 bites
Calories47kcal
AuthorAbbey Sharp

Ingredients

  • 1 lb chickpea macaroni
  • 2 tbsp butter
  • 1/2 yellow onion finely diced
  • 2 cloves garlic minced
  • 3 tbsp whole wheat flour
  • 1 3/4 cups whole milk
  • 2 cups frozen butternut squash cubes thawed
  • 1 tsp dijon mustard
  • 1/4 tsp paprika
  • 1 cup grated cheddar
  • 1 cup grated fresh mozzarella
  • Salt and pepper to taste
  • 2 eggs beaten
  • 2 tbsp hemp hearts
  • 2 tbsp finely grated parmesan cheese
  • 1 tbsp ground flax

Instructions

  • Cook the pasta al dente according to box directions. Set aside.
  • To a medium skillet with high sides, over medium heat, heat the butter.
  • Add the onions and garlic and cook until softened and fragrant, about 2-3 minutes.
  • Add the flour and stir to make a roux.
  • Add the milk and cook over medium low heat, stirring frequently until the milk bubbles slightly and thickens.
  • Add the butternut squash, mustard and paprika and cook for an additional 4-5 minutes until they are soft.
  • Transfer to a blender and puree until smooth. Return the sauce back to the pot over medium low heat and add the cheddar and mozzarella cheese. Cook until the cheese melts. Season with salt and pepper to taste.
  • Take the sauce off the heat and add to the pasta.
  • Beat the eggs and quickly mix with the sauce and pasta.
  • Spray 72 mini muffin tins with nonstick spray (ideally use silicon like these ones). Fill the muffin tins with the mixture and top with flax, hemp hearts and parmesan.
  • Bake for 15-20 minutes or until golden brown and set in a 350 degree oven.
  • Serve right away, or transfer to a freezer bag to pull out as easy on the go snacks.

Notes

  • I recommend grating your own cheese instead of buying pre-grated cheese. Pre-grated cheese doesn’t melt as nicely as cheese that you grate yourself.
  • You can add panko on top of the mac and cheese bites before baking to give them more of a crunch.
  • If you are looking to buy a muffin tin for this, I recommend a silicone muffin tin as you can easily pop the mac and cheese bites out in a flash.

Nutrition

Calories47kcalCarbohydrates5gProtein3gFat2gSaturated Fat1gCholesterol9mgSodium37mgPotassium29mgFiber1gSugar1gVitamin A473IUVitamin C1mgCalcium36mgIron1mg
Mention @AbbeysKitchen or tag #abbeyskitchen if you try and share this recipe!
Abbey Sharp

Abbey Sharp is a Registered Dietitian (RD), regulated by the Ontario College of Dietitians. She is a mom, YouTuber, Blogger, award winning cookbook author, media coach specializing in food and nutrition influencers, and a frequent contributor to national publications like Healthline and on national broadcast TV shows.

CONSUMER NOTICE: You should assume that the publisher of this website has an affiliate relationship and/or another material connection to the providers of goods and services mentioned on this website and may be compensated when you purchase from a provider. You should always perform due diligence before buying goods or services from anyone via the Internet or offline.

About Abbey Sharp

Abbey Sharp is a Registered Dietitian (RD), regulated by the Ontario College of Dietitians. She is a mom, YouTuber, Blogger, award winning cookbook author, media coach specializing in food and nutrition influencers, and a frequent contributor to national publications like Healthline and on national broadcast TV shows.

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Reader Interactions

21 Comments

  1. Emily Hanifen says

    January 13, 2022 at 2:14 pm

    5 stars
    Delicious!

    reply to this comment
  2. Gabriel Inpool says

    July 9, 2021 at 4:47 am

    My family can put away some mac n cheese, and I love how this was healthified by sneaking some squash in there.Genius. Great job this month! 🙂

    reply to this comment
  3. Richard Pooldaily says

    July 7, 2021 at 10:03 pm

    5 stars
    My family can put away some mac n cheese, and I love how this was healthified by sneaking some squash in there.Genius. Great job this month! 🙂

    reply to this comment
  4. Marie-Therese Gummer says

    April 27, 2020 at 11:12 am

    5 stars
    Delicious! My daughter loves squash so thought these would be a great meal for her. VERY easy to make and personally I found them really good as well. I froze the majority so we would have easy lunch/dinner options. I used lactose free cheese to make ours. Thank you for a wonderful recipe!

    reply to this comment
    • Abbey Sharp says

      April 27, 2020 at 11:43 am

      Amazing! My pleasure

      reply to this comment
  5. Shannon says

    March 22, 2020 at 1:39 pm

    Are you supposed to pre-cook the butternut squash?

    reply to this comment
    • Abbey Sharp says

      March 22, 2020 at 1:41 pm

      theyre frozen so theyre already actually cooked!

      reply to this comment
      • Shannon says

        March 22, 2020 at 6:27 pm

        But I just chopped my own squash, I didn’t buy it frozen. So should I be cooking it first before I freeze it?

  6. Angela says

    August 20, 2019 at 1:55 pm

    I am always looking for new ways to use butternut squash! Can’t wait to try this!!

    reply to this comment
    • Abbey Sharp says

      August 21, 2019 at 1:58 pm

      Enjoy!

      reply to this comment
  7. Angela says

    August 20, 2019 at 1:53 pm

    I am always looking for ways to use butternut squash! Can’t wait to try this recipe!!

    reply to this comment
  8. Julie says

    August 20, 2019 at 9:47 am

    5 stars
    What a great idea! Totally making these for the boys. They just tried pasta and of course, love it. 🙂

    reply to this comment
    • Abbey Sharp says

      August 21, 2019 at 1:58 pm

      Awesome. Enjoy love

      reply to this comment
  9. Leslie says

    August 19, 2019 at 10:22 pm

    I love that you put these in muffin form! There is something so comforting for littles when food is presented this way. They look yummy!

    reply to this comment
    • Abbey Sharp says

      August 20, 2019 at 9:14 am

      Totally. Thanks Leslie

      reply to this comment
  10. Kalee says

    August 19, 2019 at 7:56 pm

    5 stars
    I love mac and cheese, and I’m so excited for butternut squash to be in season! Such a yummy snack!

    reply to this comment
    • Abbey Sharp says

      August 20, 2019 at 9:14 am

      For sure! Thanks love

      reply to this comment
  11. Kelly says

    August 19, 2019 at 4:56 pm

    I need to try chickpea macaroni….and the rest of this recipe. It looks like a crowd pleaser – for young and old!

    reply to this comment
    • Abbey Sharp says

      August 20, 2019 at 9:14 am

      For sure. Thanks 🙂

      reply to this comment
  12. Deborah Brooks says

    August 19, 2019 at 9:14 am

    I love mac n cheese! It’s even better when it has hidden veggies in it

    reply to this comment
    • Abbey Sharp says

      August 19, 2019 at 12:47 pm

      so so good

      reply to this comment
5 from 12 votes (7 ratings without comment)

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